STRINGSTRING
MDS_2628 MDS_2628 tolB tolB MDS_3321 MDS_3321 MDS_2630 MDS_2630 pap pap MDS_2629 MDS_2629 ccoO ccoO ccoO-2 ccoO-2 MDS_0975 MDS_0975 MDS_1527 MDS_1527 tolR tolR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2628OmpF family protein. (326 aa)    
Predicted Functional Partners:
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.798
MDS_3321
Outer membrane chaperone Skp.
 
 
 0.707
MDS_2630
TM helix repeat-containing protein.
 
   
 0.677
pap
Hypothetical protein.
   
    0.672
MDS_2629
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.645
ccoO
Cbb3-type cytochrome c oxidase subunit II.
  
 
 0.636
ccoO-2
Cbb3-type cytochrome c oxidase subunit II.
  
 
 0.636
MDS_0975
2-alkenal reductase.
    
 
 0.632
MDS_1527
Protease Do; Belongs to the peptidase S1C family.
    
 
 0.632
tolR
Biopolymer transport protein ExbD/TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.607
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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