STRINGSTRING
MDS_2641 MDS_2641 prpB prpB MDS_0218 MDS_0218 pdhR pdhR MDS_2639 MDS_2639 acnD acnD prpF prpF MDS_2642 MDS_2642 MDS_2643 MDS_2643 MDS_2644 MDS_2644
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2641GntR family transcriptional regulator. (240 aa)    
Predicted Functional Partners:
prpB
2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.894
MDS_0218
DNA-binding transcriptional regulator GlcC.
 
  
 0.712
pdhR
GntR family transcriptional regulator.
 
  
 0.683
MDS_2639
Methylcitrate synthase; Belongs to the citrate synthase family.
  
  
 0.648
acnD
Aconitate hydratase.
 
  
 0.640
prpF
Methylitaconate delta2-delta3-isomerase.
 
  
 0.636
MDS_2642
Hypothetical protein.
       0.469
MDS_2643
Hypothetical protein.
       0.469
MDS_2644
alpha-L-glutamate ligase-like protein.
       0.469
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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