STRINGSTRING
MDS_2687 MDS_2687 MDS_2688 MDS_2688 MDS_3243 MDS_3243 dnaJ dnaJ cueR cueR MDS_2692 MDS_2692 MDS_2689 MDS_2689 MDS_2691 MDS_2691 MDS_2684 MDS_2684 MDS_4015 MDS_4015 MDS_2686 MDS_2686
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2687MerR family transcriptional regulator. (126 aa)    
Predicted Functional Partners:
MDS_2688
isovaleryl-CoA dehydrogenase.
 
    0.744
MDS_3243
Heat shock protein DnaJ domain-containing protein.
  
 
 0.607
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
 
 0.607
cueR
MerR family transcriptional regulator.
  
   
 0.581
MDS_2692
hydroxymethylglutaryl-CoA lyase.
 
  
 0.572
MDS_2689
propionyl-CoA carboxylase.
  
  
 0.560
MDS_2691
3-methylcrotonoyl-CoA carboxylase, alpha subunit.
  
 
 0.548
MDS_2684
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.535
MDS_4015
MerR family transcriptional regulator.
  
     0.532
MDS_2686
Transcriptional regulator.
       0.521
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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