STRINGSTRING
MDS_2723 MDS_2723 MDS_2724 MDS_2724 MDS_2725 MDS_2725 MDS_2726 MDS_2726 MDS_2729 MDS_2729 MDS_2728 MDS_2728 MDS_2730 MDS_2730 MDS_2727 MDS_2727 MDS_4835 MDS_4835 znuC znuC MDS_2964 MDS_2964
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2723ABC transporter, periplasmic substrate-binding protein, putative. (300 aa)    
Predicted Functional Partners:
MDS_2724
Hypothetical protein.
 
  
 0.990
MDS_2725
Cation ABC transporter, ATP-binding protein.
 
  
 0.990
MDS_2726
Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
    0.969
MDS_2729
Hypothetical protein.
 
    0.959
MDS_2728
Hypothetical protein.
 
    0.941
MDS_2730
Hypothetical protein.
 
    0.916
MDS_2727
Hypothetical protein.
  
    0.860
MDS_4835
ABC-3 protein.
 
  
 0.856
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.834
MDS_2964
Ferric uptake regulator family protein.
 
  
 0.664
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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