MDS_2730 protein (Pseudomonas mendocina NK01)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MDS_2730

Hypothetical protein. (382 aa)

Predicted Functional Partners:

MDS_2729

0.988

MDS_2723

0.916

MDS_2727

0.915

MDS_2728

0.908

MDS_2726

0.888

MDS_2724

0.829

MDS_2725

0.829

MDS_2736

0.704

MDS_0298

0.693

MDS_2733

0.645

Your Current Organism:

Pseudomonas mendocina NK01

NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MDS_0298	MDS_2730	TonB-dependent siderophore receptor.	Hypothetical protein.	0.693
MDS_2723	MDS_2724	ABC transporter, periplasmic substrate-binding protein, putative.	Hypothetical protein.	0.990
MDS_2723	MDS_2725	ABC transporter, periplasmic substrate-binding protein, putative.	Cation ABC transporter, ATP-binding protein.	0.990
MDS_2723	MDS_2726	ABC transporter, periplasmic substrate-binding protein, putative.	Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.	0.969
MDS_2723	MDS_2727	ABC transporter, periplasmic substrate-binding protein, putative.	Hypothetical protein.	0.860
MDS_2723	MDS_2728	ABC transporter, periplasmic substrate-binding protein, putative.	Hypothetical protein.	0.941
MDS_2723	MDS_2729	ABC transporter, periplasmic substrate-binding protein, putative.	Hypothetical protein.	0.959
MDS_2723	MDS_2730	ABC transporter, periplasmic substrate-binding protein, putative.	Hypothetical protein.	0.916
MDS_2724	MDS_2723	Hypothetical protein.	ABC transporter, periplasmic substrate-binding protein, putative.	0.990
MDS_2724	MDS_2725	Hypothetical protein.	Cation ABC transporter, ATP-binding protein.	0.999
MDS_2724	MDS_2726	Hypothetical protein.	Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.	0.998
MDS_2724	MDS_2727	Hypothetical protein.	Hypothetical protein.	0.942
MDS_2724	MDS_2728	Hypothetical protein.	Hypothetical protein.	0.904
MDS_2724	MDS_2729	Hypothetical protein.	Hypothetical protein.	0.975
MDS_2724	MDS_2730	Hypothetical protein.	Hypothetical protein.	0.829
MDS_2725	MDS_2723	Cation ABC transporter, ATP-binding protein.	ABC transporter, periplasmic substrate-binding protein, putative.	0.990
MDS_2725	MDS_2724	Cation ABC transporter, ATP-binding protein.	Hypothetical protein.	0.999
MDS_2725	MDS_2726	Cation ABC transporter, ATP-binding protein.	Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.	0.998
MDS_2725	MDS_2727	Cation ABC transporter, ATP-binding protein.	Hypothetical protein.	0.942
MDS_2725	MDS_2728	Cation ABC transporter, ATP-binding protein.	Hypothetical protein.	0.905