STRINGSTRING
MDS_2773 MDS_2773 MDS_0885 MDS_0885 MDS_1665 MDS_1665 MDS_0773 MDS_0773 MDS_0886 MDS_0886 gspF gspF gspH gspH pilB pilB gspE gspE MDS_4614 MDS_4614 dprA dprA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2773Helix-hairpin-helix repeat-containing competence protein ComEA. (107 aa)    
Predicted Functional Partners:
MDS_0885
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.827
MDS_1665
DNA internalization-related competence protein ComA.
 
  
 0.764
MDS_0773
Type II secretion system protein.
  
  
 0.653
MDS_0886
Pilin biogenesis protein.
  
  
 0.653
gspF
General secretion pathway protein F.
  
  
 0.653
gspH
General secretion pathway protein H.
 
  
 0.581
pilB
Type IV-A pilus assembly ATPase PilB.
  
  
 0.562
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.562
MDS_4614
Type II secretion system protein E.
  
  
 0.562
dprA
DNA protecting protein DprA.
 
  
 0.561
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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