STRINGSTRING
MDS_2963 MDS_2963 MDS_4503 MDS_4503 ribD ribD MDS_3733 MDS_3733 dusA dusA MDS_0908 MDS_0908 MDS_3576 MDS_3576 MDS_4504 MDS_4504 MDS_0975 MDS_0975 MDS_1344 MDS_1344 MDS_1527 MDS_1527
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
MDS_2963Coenzyme PQQ biosynthesis protein PqqF. (791 aa)    
Predicted Functional Partners:
MDS_4503
Peptidase M16 domain-containing protein.
  
 
 0.540
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 
 0.508
MDS_3733
NUDIX hydrolase.
  
 
  0.483
dusA
tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
       0.464
MDS_0908
Flavodoxin/nitric oxide synthase.
   
 
  0.456
MDS_3576
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.445
MDS_4504
Peptidase M16 domain-containing protein.
  
 
 0.427
MDS_0975
2-alkenal reductase.
   
 
 0.426
MDS_1344
Peptidylprolyl isomerase, FKBP-type.
  
 
  0.426
MDS_1527
Protease Do; Belongs to the peptidase S1C family.
   
 
 0.426
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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