STRINGSTRING
MDS_2964 MDS_2964 MDS_2726 MDS_2726 MDS_2723 MDS_2723 MDS_2725 MDS_2725 MDS_2729 MDS_2729 MDS_2724 MDS_2724 rpoA rpoA rubA rubA tal tal MDS_0587 MDS_0587 ahpC ahpC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2964Ferric uptake regulator family protein. (100 aa)    
Predicted Functional Partners:
MDS_2726
Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.672
MDS_2723
ABC transporter, periplasmic substrate-binding protein, putative.
 
  
 0.664
MDS_2725
Cation ABC transporter, ATP-binding protein.
 
  
 0.655
MDS_2729
Hypothetical protein.
  
  
 0.599
MDS_2724
Hypothetical protein.
 
  
 0.578
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.578
rubA
Rubredoxin/rubredoxin reductase.
  
  
 0.553
tal
Transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
       0.542
MDS_0587
Glutamate synthase subunit alpha.
     
 0.526
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.500
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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