STRINGSTRING
MDS_3003 MDS_3003 MDS_3002 MDS_3002 MDS_1792 MDS_1792 MDS_1790 MDS_1790 rnc rnc MDS_3001 MDS_3001 MDS_2079 MDS_2079 MDS_3947 MDS_3947
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3003GCN5-related N-acetyltransferase. (187 aa)    
Predicted Functional Partners:
MDS_3002
Short-chain dehydrogenase/reductase SDR.
       0.741
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.635
MDS_1790
Lysine/ornithine N-monooxygenase-like protein.
 
  
 0.602
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.516
MDS_3001
Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.431
MDS_2079
Hypothetical protein; Belongs to the UPF0502 family.
  
  
 0.411
MDS_3947
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.411
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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