MDS_3007 protein (Pseudomonas mendocina NK01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MDS_3007

Alpha/beta hydrolase domain-containing protein. (309 aa)

Predicted Functional Partners:

MDS_1792

0.938

MDS_3008

0.931

MDS_3006

0.850

nuoC

0.778

MDS_2086

0.658

MDS_2472

0.611

MDS_3009

0.608

MDS_4117

0.589

MDS_2352

0.583

nuoI

0.539

Your Current Organism:

Pseudomonas mendocina NK01

NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MDS_1792	MDS_2086	MDS_1792	MDS_2086	Amino acid adenylation domain-containing protein.	Cyclohexanone monooxygenase.	0.789
MDS_1792	MDS_2352	MDS_1792	MDS_2352	Amino acid adenylation domain-containing protein.	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.923
MDS_1792	MDS_2472	MDS_1792	MDS_2472	Amino acid adenylation domain-containing protein.	Oxidoreductase.	0.959
MDS_1792	MDS_3006	MDS_1792	MDS_3006	Amino acid adenylation domain-containing protein.	Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.823
MDS_1792	MDS_3007	MDS_1792	MDS_3007	Amino acid adenylation domain-containing protein.	Alpha/beta hydrolase domain-containing protein.	0.938
MDS_1792	MDS_3008	MDS_1792	MDS_3008	Amino acid adenylation domain-containing protein.	Flavoprotein involved in K+ transport-like protein.	0.789
MDS_1792	MDS_3009	MDS_1792	MDS_3009	Amino acid adenylation domain-containing protein.	AraC family transcriptional regulator.	0.519
MDS_1792	MDS_4117	MDS_1792	MDS_4117	Amino acid adenylation domain-containing protein.	NAD-dependent epimerase/dehydratase.	0.965
MDS_1792	nuoC	MDS_1792	MDS_2355	Amino acid adenylation domain-containing protein.	Bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.	0.998
MDS_1792	nuoI	MDS_1792	MDS_2350	Amino acid adenylation domain-containing protein.	NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.943
MDS_2086	MDS_1792	MDS_2086	MDS_1792	Cyclohexanone monooxygenase.	Amino acid adenylation domain-containing protein.	0.789
MDS_2086	MDS_3007	MDS_2086	MDS_3007	Cyclohexanone monooxygenase.	Alpha/beta hydrolase domain-containing protein.	0.658
MDS_2352	MDS_1792	MDS_2352	MDS_1792	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Amino acid adenylation domain-containing protein.	0.923
MDS_2352	MDS_2472	MDS_2352	MDS_2472	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Oxidoreductase.	0.953
MDS_2352	MDS_3007	MDS_2352	MDS_3007	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Alpha/beta hydrolase domain-containing protein.	0.583
MDS_2352	MDS_4117	MDS_2352	MDS_4117	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	NAD-dependent epimerase/dehydratase.	0.984
MDS_2352	nuoC	MDS_2352	MDS_2355	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	Bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.	0.999
MDS_2352	nuoI	MDS_2352	MDS_2350	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.998
MDS_2472	MDS_1792	MDS_2472	MDS_1792	Oxidoreductase.	Amino acid adenylation domain-containing protein.	0.959
MDS_2472	MDS_2352	MDS_2472	MDS_2352	Oxidoreductase.	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.953