STRINGSTRING
MDS_3029 MDS_3029 MDS_3030 MDS_3030 glgB glgB treZ treZ MDS_1792 MDS_1792 MDS_3031 MDS_3031 MDS_3692 MDS_3692 MDS_4599 MDS_4599 MDS_4775 MDS_4775 acpP_1 acpP_1 rfbC rfbC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
MDS_3029Glycosyl transferase, group 1. (346 aa)    
Predicted Functional Partners:
MDS_3030
Metallophosphoesterase.
   
 0.929
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.632
treZ
Malto-oligosyltrehalose trehalohydrolase.
   
 0.632
MDS_1792
Amino acid adenylation domain-containing protein.
  
 
 0.599
MDS_3031
AraC family transcriptional regulator.
       0.586
MDS_3692
Alpha/beta fold family hydrolase-like protein.
   
 
 0.573
MDS_4599
Sugar transferase.
 
  
 0.503
MDS_4775
Glycosyl transferase family protein.
  
 
 0.493
acpP_1
AcpP; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.475
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.467
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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