STRINGSTRING
MDS_3061 MDS_3061 speB speB MDS_1792 MDS_1792 MDS_3060 MDS_3060 MDS_4448 MDS_4448 MDS_3579 MDS_3579 MDS_3059 MDS_3059 MDS_2539 MDS_2539 MDS_0532 MDS_0532 ybeY ybeY MDS_2848 MDS_2848
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3061Beta-lactamase domain-containing protein. (185 aa)    
Predicted Functional Partners:
speB
Putative agmatinase; Belongs to the arginase family.
 
   
 0.731
MDS_1792
Amino acid adenylation domain-containing protein.
   
 
 0.691
MDS_3060
Permease for cytosine/purine, uracil, thiamine, allantoin.
       0.586
MDS_4448
Sarcosine oxidase alpha subunit family protein; Belongs to the GcvT family.
 
 0.552
MDS_3579
Alpha/beta hydrolase fold protein.
  
  
 0.547
MDS_3059
Hypothetical protein; Belongs to the TPP enzyme family.
 
   
 0.533
MDS_2539
Hypothetical protein.
  
     0.498
MDS_0532
Putative FMN oxidoreductase.
  
 0.496
ybeY
Putative metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
 
 
 0.445
MDS_2848
N-methyltryptophan oxidase.
  
    0.423
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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