STRINGSTRING
MDS_3076 MDS_3076 MDS_3077 MDS_3077 MDS_3078 MDS_3078 MDS_3858 MDS_3858 MDS_3079 MDS_3079 MDS_3860 MDS_3860 MDS_1437 MDS_1437 MDS_3859 MDS_3859 MDS_0697 MDS_0697 MDS_0398 MDS_0398 MDS_1879 MDS_1879
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3076Hypothetical protein. (174 aa)    
Predicted Functional Partners:
MDS_3077
Glutamine amidotransferase, class-II.
  
    0.835
MDS_3078
Histidine triad (HIT) protein.
       0.800
MDS_3858
Hypothetical protein.
  
     0.638
MDS_3079
Hypothetical protein.
       0.631
MDS_3860
Hypothetical protein.
  
     0.626
MDS_1437
Hypothetical protein.
  
     0.619
MDS_3859
Hypothetical protein.
  
     0.584
MDS_0697
HdoD.
  
     0.569
MDS_0398
TetR family transcriptional regulator.
  
     0.563
MDS_1879
Hypothetical protein.
  
     0.560
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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