STRINGSTRING
MDS_3089 MDS_3089 MDS_3086 MDS_3086 MDS_3579 MDS_3579 MDS_3087 MDS_3087 rnd rnd MDS_2029 MDS_2029 MDS_2013 MDS_2013 MDS_2028 MDS_2028 MDS_3085 MDS_3085 MDS_2230 MDS_2230 MDS_2227 MDS_2227
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3089Gluconolactonase. (354 aa)    
Predicted Functional Partners:
MDS_3086
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein.
     
 0.635
MDS_3579
Alpha/beta hydrolase fold protein.
  
   
 0.592
MDS_3087
Hypothetical protein.
       0.589
rnd
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
       0.589
MDS_2029
Hypothetical protein.
  
    0.528
MDS_2013
Alpha/beta hydrolase fold protein.
  
   
 0.508
MDS_2028
Short-chain dehydrogenase/reductase SDR.
 
  
 0.478
MDS_3085
Hypothetical protein; Belongs to the UPF0260 family.
       0.463
MDS_2230
Phosphoglycerate mutase.
 
  
 0.460
MDS_2227
Short chain dehydrogenase.
 
  
 0.450
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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