STRINGSTRING
MDS_3134 MDS_3134 MDS_3133 MDS_3133 MDS_3132 MDS_3132 MDS_1031 MDS_1031 MDS_1032 MDS_1032 MDS_3035 MDS_3035 MDS_3130 MDS_3130 MDS_2284 MDS_2284 MDS_3131 MDS_3131 MDS_4055 MDS_4055 MDS_1296 MDS_1296
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3134Protein of unknown function DUF306, MetA and HslJ. (132 aa)    
Predicted Functional Partners:
MDS_3133
Hypothetical protein.
       0.800
MDS_3132
Multi-sensor hybrid histidine kinase.
  
    0.558
MDS_1031
Hypothetical protein.
 
     0.527
MDS_1032
Hypothetical protein.
 
     0.526
MDS_3035
Patatin.
  
    0.508
MDS_3130
Integral membrane sensor signal transduction histidine kinase.
 
     0.498
MDS_2284
Amidohydrolase 2.
  
     0.473
MDS_3131
Two component transcriptional regulator.
       0.436
MDS_4055
Redoxin domain-containing protein.
 
 
   0.422
MDS_1296
Outer membrane porin.
  
     0.421
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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