Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0474 | MDS_3136 | MDS_0474 | MDS_3136 | YceI family protein. | Cytochrome b561. | 0.533 |
MDS_0474 | MDS_3533 | MDS_0474 | MDS_3533 | YceI family protein. | Cytochrome b561. | 0.490 |
MDS_3136 | MDS_0474 | MDS_3136 | MDS_0474 | Cytochrome b561. | YceI family protein. | 0.533 |
MDS_3136 | MDS_3138 | MDS_3136 | MDS_3138 | Cytochrome b561. | RNA-binding S4 domain-containing protein. | 0.519 |
MDS_3136 | MDS_3533 | MDS_3136 | MDS_3533 | Cytochrome b561. | Cytochrome b561. | 0.467 |
MDS_3136 | rimO | MDS_3136 | MDS_3137 | Cytochrome b561. | Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.862 |
MDS_3138 | MDS_3136 | MDS_3138 | MDS_3136 | RNA-binding S4 domain-containing protein. | Cytochrome b561. | 0.519 |
MDS_3138 | rimO | MDS_3138 | MDS_3137 | RNA-binding S4 domain-containing protein. | Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.626 |
MDS_3533 | MDS_0474 | MDS_3533 | MDS_0474 | Cytochrome b561. | YceI family protein. | 0.490 |
MDS_3533 | MDS_3136 | MDS_3533 | MDS_3136 | Cytochrome b561. | Cytochrome b561. | 0.467 |
rimO | MDS_3136 | MDS_3137 | MDS_3136 | Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | Cytochrome b561. | 0.862 |
rimO | MDS_3138 | MDS_3137 | MDS_3138 | Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | RNA-binding S4 domain-containing protein. | 0.626 |