STRINGSTRING
MDS_3154 MDS_3154 grxD grxD MDS_3155 MDS_3155 nfuA nfuA MDS_1301 MDS_1301 MDS_3156 MDS_3156 MDS_3151 MDS_3151 MDS_3153 MDS_3153 MDS_3152 MDS_3152 MDS_2366 MDS_2366 csrA csrA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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MDS_3154Transcriptional regulator BolA; Belongs to the BolA/IbaG family. (101 aa)    
Predicted Functional Partners:
grxD
Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 0.907
MDS_3155
Hypothetical protein.
  
    0.895
nfuA
HesB/YadR/YfhF-family protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.611
MDS_1301
Ferritin, Dps family protein; Belongs to the Dps family.
   
    0.524
MDS_3156
Hypothetical protein.
     
 0.508
MDS_3151
ABC transporter related protein.
       0.501
MDS_3153
Hypothetical protein; Belongs to the UPF0176 family.
       0.501
MDS_3152
DsbA oxidoreductase.
       0.496
MDS_2366
Cupin 4 family protein.
  
     0.466
csrA
Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).
   
  
 0.419
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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