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MDS_3248 MDS_3248 MDS_3249 MDS_3249 MDS_1792 MDS_1792 MDS_3250 MDS_3250 MDS_3576 MDS_3576 MDS_3247 MDS_3247 MDS_3401 MDS_3401 MDS_4759 MDS_4759
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3248L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (393 aa)    
Predicted Functional Partners:
MDS_3249
AMP-dependent synthetase and ligase.
   
 
 0.694
MDS_1792
Amino acid adenylation domain-containing protein.
   
 
 0.578
MDS_3250
acyl-CoA dehydrogenase domain-containing protein.
 
 
 0.566
MDS_3576
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.552
MDS_3247
Hypothetical protein.
       0.543
MDS_3401
hydroxymethylglutaryl-CoA lyase.
 
  0.474
MDS_4759
acyl-CoA dehydrogenase domain-containing protein.
 
 0.428
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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