Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0587 | nuoC | MDS_0587 | MDS_2355 | Glutamate synthase subunit alpha. | Bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.581 |
MDS_0587 | pcm | MDS_0587 | MDS_3300 | Glutamate synthase subunit alpha. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.500 |
MDS_3298 | MDS_3299 | MDS_3298 | MDS_3299 | Peptidase M23B. | Hypothetical protein. | 0.561 |
MDS_3298 | fghA | MDS_3298 | MDS_3304 | Peptidase M23B. | Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. | 0.424 |
MDS_3298 | ispF | MDS_3298 | MDS_3303 | Peptidase M23B. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.536 |
MDS_3298 | pcm | MDS_3298 | MDS_3300 | Peptidase M23B. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.654 |
MDS_3298 | rpoS | MDS_3298 | MDS_3297 | Peptidase M23B. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.766 |
MDS_3298 | surE | MDS_3298 | MDS_3301 | Peptidase M23B. | Stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.693 |
MDS_3298 | truD | MDS_3298 | MDS_3302 | Peptidase M23B. | tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.536 |
MDS_3299 | MDS_3298 | MDS_3299 | MDS_3298 | Hypothetical protein. | Peptidase M23B. | 0.561 |
MDS_3299 | fghA | MDS_3299 | MDS_3304 | Hypothetical protein. | Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. | 0.530 |
MDS_3299 | ispF | MDS_3299 | MDS_3303 | Hypothetical protein. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.741 |
MDS_3299 | pcm | MDS_3299 | MDS_3300 | Hypothetical protein. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.733 |
MDS_3299 | rpoS | MDS_3299 | MDS_3297 | Hypothetical protein. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.414 |
MDS_3299 | surE | MDS_3299 | MDS_3301 | Hypothetical protein. | Stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.733 |
MDS_3299 | truD | MDS_3299 | MDS_3302 | Hypothetical protein. | tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.733 |
fghA | MDS_3298 | MDS_3304 | MDS_3298 | Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. | Peptidase M23B. | 0.424 |
fghA | MDS_3299 | MDS_3304 | MDS_3299 | Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. | Hypothetical protein. | 0.530 |
fghA | ispF | MDS_3304 | MDS_3303 | Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | 0.568 |
fghA | pcm | MDS_3304 | MDS_3300 | Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.571 |
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