MDS_3370 protein (Pseudomonas mendocina NK01)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Experiments

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[Homology]

Score

MDS_3370

ABC transporter related protein. (388 aa)

Predicted Functional Partners:

MDS_3372

0.998

MDS_3371

0.997

MDS_3373

0.994

MDS_2144

0.929

MDS_2145

0.911

MDS_2147

0.824

MDS_3369

0.748

ptsP

0.590

MDS_2486

0.486

MDS_2645

0.484

Your Current Organism:

Pseudomonas mendocina NK01

NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MDS_2144	MDS_2145	MDS_2144	MDS_2145	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.999
MDS_2144	MDS_2147	MDS_2144	MDS_2147	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein.	0.996
MDS_2144	MDS_2486	MDS_2144	MDS_2486	Binding-protein-dependent transport systems inner membrane component.	Hypothetical protein.	0.479
MDS_2144	MDS_2645	MDS_2144	MDS_2645	Binding-protein-dependent transport systems inner membrane component.	Hypothetical protein.	0.527
MDS_2144	MDS_3369	MDS_2144	MDS_3369	Binding-protein-dependent transport systems inner membrane component.	Porin, LamB type.	0.414
MDS_2144	MDS_3370	MDS_2144	MDS_3370	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein.	0.929
MDS_2144	MDS_3371	MDS_2144	MDS_3371	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.950
MDS_2144	MDS_3373	MDS_2144	MDS_3373	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein.	0.879
MDS_2145	MDS_2144	MDS_2145	MDS_2144	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.999
MDS_2145	MDS_2147	MDS_2145	MDS_2147	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein.	0.999
MDS_2145	MDS_3370	MDS_2145	MDS_3370	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein.	0.911
MDS_2145	MDS_3372	MDS_2145	MDS_3372	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.959
MDS_2145	MDS_3373	MDS_2145	MDS_3373	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein.	0.928
MDS_2145	ptsP	MDS_2145	MDS_0900	Binding-protein-dependent transport systems inner membrane component.	Phosphoenolpyruvate--protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.	0.403
MDS_2147	MDS_2144	MDS_2147	MDS_2144	Extracellular solute-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.996
MDS_2147	MDS_2145	MDS_2147	MDS_2145	Extracellular solute-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.999
MDS_2147	MDS_3370	MDS_2147	MDS_3370	Extracellular solute-binding protein.	ABC transporter related protein.	0.824
MDS_2147	MDS_3371	MDS_2147	MDS_3371	Extracellular solute-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.912
MDS_2147	MDS_3372	MDS_2147	MDS_3372	Extracellular solute-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.856
MDS_2147	ptsP	MDS_2147	MDS_0900	Extracellular solute-binding protein.	Phosphoenolpyruvate--protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.	0.425