STRINGSTRING
MDS_3372 MDS_3372 MDS_3371 MDS_3371 MDS_3370 MDS_3370 MDS_3373 MDS_3373 MDS_2145 MDS_2145 MDS_2143 MDS_2143 MDS_2142 MDS_2142 MDS_2147 MDS_2147 MDS_3369 MDS_3369 treS treS MDS_2645 MDS_2645
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3372Binding-protein-dependent transport systems inner membrane component. (302 aa)    
Predicted Functional Partners:
MDS_3371
Binding-protein-dependent transport systems inner membrane component.
 0.999
MDS_3370
ABC transporter related protein.
 
 0.998
MDS_3373
Extracellular solute-binding protein.
 
 0.997
MDS_2145
Binding-protein-dependent transport systems inner membrane component.
 
 0.959
MDS_2143
ABC transporter related protein; Belongs to the ABC transporter superfamily.
 
 
 0.932
MDS_2142
ABC transporter related protein; Belongs to the ABC transporter superfamily.
 
 
 0.917
MDS_2147
Extracellular solute-binding protein.
  
 
 0.856
MDS_3369
Porin, LamB type.
 
  
 0.712
treS
Trehalose synthase.
  
  
 0.542
MDS_2645
Hypothetical protein.
  
  
 0.527
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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