MDS_3373 protein (Pseudomonas mendocina NK01)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Experiments

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[Homology]

Score

MDS_3373

Extracellular solute-binding protein. (417 aa)

Predicted Functional Partners:

MDS_3371

0.997

MDS_3372

0.997

MDS_3370

0.994

MDS_2145

0.928

MDS_2144

0.879

MDS_2142

0.824

MDS_2143

0.824

MDS_3374

0.580

MDS_3375

0.571

MDS_3369

0.481

Your Current Organism:

Pseudomonas mendocina NK01

NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MDS_2142	MDS_2143	ABC transporter related protein; Belongs to the ABC transporter superfamily.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.964
MDS_2142	MDS_2144	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.998
MDS_2142	MDS_2145	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.997
MDS_2142	MDS_3369	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Porin, LamB type.	0.551
MDS_2142	MDS_3371	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.869
MDS_2142	MDS_3372	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.917
MDS_2142	MDS_3373	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Extracellular solute-binding protein.	0.824
MDS_2143	MDS_2142	ABC transporter related protein; Belongs to the ABC transporter superfamily.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.964
MDS_2143	MDS_2144	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.998
MDS_2143	MDS_2145	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.997
MDS_2143	MDS_3369	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Porin, LamB type.	0.551
MDS_2143	MDS_3371	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.894
MDS_2143	MDS_3372	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.932
MDS_2143	MDS_3373	ABC transporter related protein; Belongs to the ABC transporter superfamily.	Extracellular solute-binding protein.	0.824
MDS_2144	MDS_2142	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.998
MDS_2144	MDS_2143	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein; Belongs to the ABC transporter superfamily.	0.998
MDS_2144	MDS_2145	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.999
MDS_2144	MDS_3369	Binding-protein-dependent transport systems inner membrane component.	Porin, LamB type.	0.414
MDS_2144	MDS_3370	Binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein.	0.929
MDS_2144	MDS_3371	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.950