STRINGSTRING
MDS_3385 MDS_3385 MDS_3384 MDS_3384 MDS_1792 MDS_1792 MDS_3388 MDS_3388 MDS_3383 MDS_3383 MDS_3382 MDS_3382
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3385Short chain dehydrogenase. (232 aa)    
Predicted Functional Partners:
MDS_3384
Beta-lactamase domain-containing protein.
  
  
 0.801
MDS_1792
Amino acid adenylation domain-containing protein.
  
 
 0.730
MDS_3388
Short-chain dehydrogenase/reductase SDR.
  
 
   0.721
MDS_3383
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.543
MDS_3382
Diguanylate phosphodiesterase.
       0.427
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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