STRINGSTRING
MDS_3403 MDS_3403 MDS_3404 MDS_3404 MDS_3407 MDS_3407 MDS_3405 MDS_3405 MDS_3406 MDS_3406 MDS_0839 MDS_0839 MDS_3059 MDS_3059 MDS_3870 MDS_3870 MDS_3869 MDS_3869 mdcB mdcB mdcC mdcC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
MDS_3403Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family. (275 aa)    
Predicted Functional Partners:
MDS_3404
CaiB/BaiF family protein; Belongs to the CoA-transferase III family.
 
 
 0.997
MDS_3407
Hypothetical protein.
 
 
 0.987
MDS_3405
Hypothetical protein.
 
  
 0.940
MDS_3406
acyl-CoA dehydrogenase.
 
  
 0.926
MDS_0839
Demethylmenaquinone methyltransferase.
    
 0.914
MDS_3059
Hypothetical protein; Belongs to the TPP enzyme family.
    
  0.901
MDS_3870
Acetolactate synthase 3 catalytic subunit.
    
  0.901
MDS_3869
Acetolactate synthase 3 regulatory subunit.
     
  0.900
mdcB
triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.894
mdcC
Malonate decarboxylase subunit delta; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
  
  
 0.890
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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