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MDS_3558 MDS_3558 MDS_4878 MDS_4878 MDS_0054 MDS_0054 MDS_1565 MDS_1565 MDS_4066 MDS_4066 ilvA ilvA MDS_2717 MDS_2717 gloA gloA MDS_2679 MDS_2679 gloA-2 gloA-2 MDS_3560 MDS_3560
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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[Homology]
Score
MDS_3558D-serine dehydratase. (451 aa)    
Predicted Functional Partners:
MDS_4878
L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.925
MDS_0054
Ectoine utilization protein EutB.
     
 0.905
MDS_1565
Hypothetical protein.
     
0.905
MDS_4066
Hypothetical protein.
     
 0.905
ilvA
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
     
 0.905
MDS_2717
Chaperone protein HchA.
  
  
  0.823
gloA
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
     
  0.800
MDS_2679
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.800
gloA-2
Lactoylglutathione lyase.
     
  0.800
MDS_3560
Hypothetical protein.
       0.536
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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