STRINGSTRING
MDS_3601 MDS_3601 MDS_3602 MDS_3602 MDS_3603 MDS_3603 MDS_4252 MDS_4252 tolA tolA MDS_1792 MDS_1792 MDS_4423 MDS_4423 MDS_0460 MDS_0460 MDS_1101 MDS_1101 MDS_1794 MDS_1794 MDS_4253 MDS_4253
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3601Putative siderophore receptor. (807 aa)    
Predicted Functional Partners:
MDS_3602
Putative transmembrane sensor.
 
  
 0.731
MDS_3603
Putative sigma-70 factor, ECF subfamily.
 
  
 0.722
MDS_4252
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.690
tolA
TonB family protein.
  
 
 0.608
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.608
MDS_4423
TonB-dependent siderophore receptor.
  
   
 0.606
MDS_0460
TonB family protein.
  
 
 0.600
MDS_1101
Putative coat protein A of bacteriophage Pf1.
  
 
 0.591
MDS_1794
TonB-dependent siderophore receptor.
 
  
 0.559
MDS_4253
Biopolymer transport protein ExbD/TolR.
 
  
 0.513
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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