STRINGSTRING
MDS_3602 MDS_3602 MDS_3603 MDS_3603 MDS_0296 MDS_0296 MDS_0097 MDS_0097 MDS_1216 MDS_1216 MDS_1801 MDS_1801 MDS_2734 MDS_2734 MDS_2731 MDS_2731 MDS_1807 MDS_1807 MDS_1788 MDS_1788 MDS_0298 MDS_0298
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3602Putative transmembrane sensor. (279 aa)    
Predicted Functional Partners:
MDS_3603
Putative sigma-70 factor, ECF subfamily.
 
 
 0.963
MDS_0296
RNA polymerase sigma factor, FecI family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.846
MDS_0097
RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.832
MDS_1216
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.832
MDS_1801
Extracytoplasmic-function sigma-70 factor.
 
 
 0.832
MDS_2734
ECF subfamily RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.832
MDS_2731
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.829
MDS_1807
RNA polymerase sigma factor.
 
 
 0.825
MDS_1788
ECF subfamily RNA polymerase sigma-24 factor.
 
 
 0.821
MDS_0298
TonB-dependent siderophore receptor.
 
 
 0.752
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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