STRINGSTRING
MDS_3610 MDS_3610 MDS_3609 MDS_3609 MDS_1792 MDS_1792 MDS_4925 MDS_4925 MDS_3608 MDS_3608 MDS_3579 MDS_3579 MDS_3956 MDS_3956 MDS_2010 MDS_2010 MDS_0758 MDS_0758 ubiA ubiA MDS_4929 MDS_4929
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3610Phytoene dehydrogenase-like protein. (506 aa)    
Predicted Functional Partners:
MDS_3609
Flavodoxin reductase.
    0.858
MDS_1792
Amino acid adenylation domain-containing protein.
     
 0.714
MDS_4925
Protoporphyrin IX magnesium-chelatase.
 
  
 0.661
MDS_3608
AMP-dependent synthetase and ligase.
     
 0.630
MDS_3579
Alpha/beta hydrolase fold protein.
 
  
 0.602
MDS_3956
Alpha/beta hydrolase fold protein.
 
  
 0.596
MDS_2010
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.569
MDS_0758
Alpha/beta hydrolase fold protein.
 
  
 0.559
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
  
 0.541
MDS_4929
Cobaltochelatase subunit CobN.
  
  
 0.532
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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