STRINGSTRING
MDS_3641 MDS_3641 MDS_3642 MDS_3642 MDS_3643 MDS_3643 MDS_3644 MDS_3644 MDS_3646 MDS_3646 MDS_4321 MDS_4321 MDS_3645 MDS_3645 MDS_3647 MDS_3647 MDS_3640 MDS_3640 MDS_3548 MDS_3548 MDS_3547 MDS_3547
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3641Hypothetical protein. (252 aa)    
Predicted Functional Partners:
MDS_3642
RDD domain-containing protein.
  
    0.777
MDS_3643
Hypothetical protein.
  
    0.682
MDS_3644
Hypothetical protein.
 
     0.643
MDS_3646
ATPase.
     
 0.595
MDS_4321
Hypothetical protein.
 
    0.594
MDS_3645
Hypothetical protein.
       0.593
MDS_3647
Hypothetical protein.
       0.593
MDS_3640
Exonuclease I.
       0.564
MDS_3548
Hypothetical protein.
  
     0.510
MDS_3547
Type IV pilus assembly PilZ.
  
     0.471
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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