STRINGSTRING
MDS_3753 MDS_3753 MDS_3752 MDS_3752 xseA xseA MDS_3383 MDS_3383 MDS_1198 MDS_1198 MDS_3848 MDS_3848 MDS_1246 MDS_1246 MDS_4794 MDS_4794 MDS_0914 MDS_0914 MDS_4387 MDS_4387 MDS_2759 MDS_2759
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3753LysR family transcriptional regulator. (323 aa)    
Predicted Functional Partners:
MDS_3752
Transmembrane pair domain-containing protein.
 
   
 0.798
xseA
Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.777
MDS_3383
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.753
MDS_1198
LysR family transcriptional regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.749
MDS_3848
Transcriptional regulator, LysR family.
  
     0.749
MDS_1246
LysR family transcriptional regulator.
  
     0.747
MDS_4794
Putative LysR-family regulatory protein.
  
     0.745
MDS_0914
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.740
MDS_4387
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.731
MDS_2759
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.727
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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