Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0038 | MDS_3766 | MDS_0038 | MDS_3766 | CDP-alcohol phosphatidyltransferase. | Helix-turn-helix domain-containing protein. | 0.813 |
MDS_0038 | pgsA | MDS_0038 | MDS_2397 | CDP-alcohol phosphatidyltransferase. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.901 |
MDS_3763 | MDS_3766 | MDS_3763 | MDS_3766 | Hypothetical protein. | Helix-turn-helix domain-containing protein. | 0.757 |
MDS_3763 | MDS_3767 | MDS_3763 | MDS_3767 | Hypothetical protein. | Type IV pilus biogenesis/stability protein PilW. | 0.730 |
MDS_3763 | bamB | MDS_3763 | MDS_3762 | Hypothetical protein. | Pyrrolo-quinoline quinone; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.976 |
MDS_3763 | hisS | MDS_3763 | MDS_3764 | Hypothetical protein. | histidyl-tRNA synthetase. | 0.946 |
MDS_3763 | ispG | MDS_3763 | MDS_3765 | Hypothetical protein. | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.722 |
MDS_3763 | ndk | MDS_3763 | MDS_3769 | Hypothetical protein. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.623 |
MDS_3763 | rlmN | MDS_3763 | MDS_3768 | Hypothetical protein. | Radical SAM protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.668 |
MDS_3766 | MDS_0038 | MDS_3766 | MDS_0038 | Helix-turn-helix domain-containing protein. | CDP-alcohol phosphatidyltransferase. | 0.813 |
MDS_3766 | MDS_3763 | MDS_3766 | MDS_3763 | Helix-turn-helix domain-containing protein. | Hypothetical protein. | 0.757 |
MDS_3766 | MDS_3767 | MDS_3766 | MDS_3767 | Helix-turn-helix domain-containing protein. | Type IV pilus biogenesis/stability protein PilW. | 0.836 |
MDS_3766 | bamB | MDS_3766 | MDS_3762 | Helix-turn-helix domain-containing protein. | Pyrrolo-quinoline quinone; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.741 |
MDS_3766 | hisS | MDS_3766 | MDS_3764 | Helix-turn-helix domain-containing protein. | histidyl-tRNA synthetase. | 0.809 |
MDS_3766 | ispG | MDS_3766 | MDS_3765 | Helix-turn-helix domain-containing protein. | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.903 |
MDS_3766 | mreB | MDS_3766 | MDS_0944 | Helix-turn-helix domain-containing protein. | Rod shape-determining protein MreB. | 0.874 |
MDS_3766 | ndk | MDS_3766 | MDS_3769 | Helix-turn-helix domain-containing protein. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.713 |
MDS_3766 | pgsA | MDS_3766 | MDS_2397 | Helix-turn-helix domain-containing protein. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.813 |
MDS_3766 | rlmN | MDS_3766 | MDS_3768 | Helix-turn-helix domain-containing protein. | Radical SAM protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.791 |
MDS_3767 | MDS_3763 | MDS_3767 | MDS_3763 | Type IV pilus biogenesis/stability protein PilW. | Hypothetical protein. | 0.730 |
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