STRINGSTRING
MDS_3847 MDS_3847 rimI rimI MDS_3848 MDS_3848 MDS_1764 MDS_1764 oadA oadA ssb ssb MDS_3849 MDS_3849 MDS_3850 MDS_3850 tsaB tsaB MDS_3298 MDS_3298 MDS_3851 MDS_3851
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_3847Hypothetical protein. (262 aa)    
Predicted Functional Partners:
rimI
SSU ribosomal protein S18P alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.735
MDS_3848
Transcriptional regulator, LysR family.
       0.718
MDS_1764
Oxaloacetate decarboxylase.
  
    0.551
oadA
Pyruvate carboxylase subunit B.
  
    0.551
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
   0.535
MDS_3849
Hypothetical protein.
       0.506
MDS_3850
Hypothetical protein.
       0.506
tsaB
Peptidase M22, glycoprotease.
  
    0.484
MDS_3298
Peptidase M23B.
  
   0.457
MDS_3851
Citrate transporter.
       0.414
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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