MDS_3958 protein (Pseudomonas mendocina NK01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MDS_3958

Regulatory protein, LuxR. (913 aa)

Predicted Functional Partners:

MDS_3960

0.609

MDS_3961

0.587

MDS_0697

0.580

MDS_3858

0.502

MDS_3860

0.501

MDS_4345

0.500

MDS_4343

0.487

MDS_1811

0.470

MDS_2949

0.461

MDS_0691

0.450

Your Current Organism:

Pseudomonas mendocina NK01

NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MDS_0691	MDS_0697	Hypothetical protein.	HdoD.	0.748
MDS_0691	MDS_3858	Hypothetical protein.	Hypothetical protein.	0.757
MDS_0691	MDS_3860	Hypothetical protein.	Hypothetical protein.	0.754
MDS_0691	MDS_3958	Hypothetical protein.	Regulatory protein, LuxR.	0.450
MDS_0697	MDS_0691	HdoD.	Hypothetical protein.	0.748
MDS_0697	MDS_1811	HdoD.	Type IV pilus assembly PilZ.	0.611
MDS_0697	MDS_3858	HdoD.	Hypothetical protein.	0.773
MDS_0697	MDS_3860	HdoD.	Hypothetical protein.	0.772
MDS_0697	MDS_3958	HdoD.	Regulatory protein, LuxR.	0.580
MDS_0697	MDS_3961	HdoD.	Hypothetical protein.	0.400
MDS_0697	MDS_4345	HdoD.	Hypothetical protein.	0.726
MDS_1811	MDS_0697	Type IV pilus assembly PilZ.	HdoD.	0.611
MDS_1811	MDS_3858	Type IV pilus assembly PilZ.	Hypothetical protein.	0.592
MDS_1811	MDS_3860	Type IV pilus assembly PilZ.	Hypothetical protein.	0.582
MDS_1811	MDS_3958	Type IV pilus assembly PilZ.	Regulatory protein, LuxR.	0.470
MDS_1811	MDS_4343	Type IV pilus assembly PilZ.	Multi-sensor signal transduction histidine kinase.	0.689
MDS_1811	MDS_4345	Type IV pilus assembly PilZ.	Hypothetical protein.	0.747
MDS_2949	MDS_3958	Integral membrane sensor signal transduction histidine kinase.	Regulatory protein, LuxR.	0.461
MDS_3858	MDS_0691	Hypothetical protein.	Hypothetical protein.	0.757
MDS_3858	MDS_0697	Hypothetical protein.	HdoD.	0.773