STRINGSTRING
MDS_4002 MDS_4002 MDS_4001 MDS_4001 MDS_0084 MDS_0084 MDS_3306 MDS_3306 MDS_3848 MDS_3848 MDS_4760 MDS_4760 MDS_4794 MDS_4794 MDS_4877 MDS_4877 MDS_4004 MDS_4004 MDS_0128 MDS_0128 MDS_3383 MDS_3383
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Experiments
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[Homology]
Score
MDS_4002LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
MDS_4001
Beta alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.788
MDS_0084
Regulatory protein, LysR:LysR, substrate-binding protein; Belongs to the LysR transcriptional regulatory family.
  
     0.649
MDS_3306
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.596
MDS_3848
Transcriptional regulator, LysR family.
  
   
 0.573
MDS_4760
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.528
MDS_4794
Putative LysR-family regulatory protein.
  
     0.512
MDS_4877
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.497
MDS_4004
TetR family transcriptional regulator.
 
 
   0.493
MDS_0128
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.485
MDS_3383
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.475
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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