STRINGSTRING
MDS_4004 MDS_4004 MDS_4005 MDS_4005 MDS_4006 MDS_4006 MDS_4007 MDS_4007 puuE puuE MDS_1917 MDS_1917 xdhC xdhC guaD guaD MDS_4003 MDS_4003 MDS_1792 MDS_1792 MDS_4002 MDS_4002
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4004TetR family transcriptional regulator. (220 aa)    
Predicted Functional Partners:
MDS_4005
Hypothetical protein.
       0.800
MDS_4006
Hypothetical protein.
       0.799
MDS_4007
Short chain dehydrogenase.
       0.664
puuE
Chitin deacetylase.
  
   
 0.586
MDS_1917
Hypothetical protein.
 
     0.552
xdhC
Molybdenum cofactor sulfurylase.
 
     0.546
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
     0.515
MDS_4003
Putative chemotaxis transducer.
   
   0.506
MDS_1792
Amino acid adenylation domain-containing protein.
     
 0.494
MDS_4002
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
 
   0.493
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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