STRINGSTRING
MDS_4007 MDS_4007 MDS_1792 MDS_1792 MDS_4005 MDS_4005 MDS_4004 MDS_4004 MDS_3388 MDS_3388 MDS_4006 MDS_4006 MDS_4008 MDS_4008 MDS_2830 MDS_2830
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4007Short chain dehydrogenase. (228 aa)    
Predicted Functional Partners:
MDS_1792
Amino acid adenylation domain-containing protein.
  
 
 0.730
MDS_4005
Hypothetical protein.
       0.665
MDS_4004
TetR family transcriptional regulator.
       0.664
MDS_3388
Short-chain dehydrogenase/reductase SDR.
  
 
   0.641
MDS_4006
Hypothetical protein.
       0.632
MDS_4008
Acetyltransferase.
       0.587
MDS_2830
Short chain dehydrogenase.
  
     0.498
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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