STRINGSTRING
MDS_4035 MDS_4035 tesB tesB MDS_4038 MDS_4038 MDS_4037 MDS_4037 MDS_4039 MDS_4039 MDS_4333 MDS_4333 MDS_1792 MDS_1792 purL purL betC betC MDS_3947 MDS_3947 MDS_1693 MDS_1693
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4035HAD family hydrolase. (197 aa)    
Predicted Functional Partners:
tesB
acyl-CoA thioesterase II.
     
 0.841
MDS_4038
GCN5-related N-acetyltransferase.
     
 0.833
MDS_4037
Hypothetical protein.
  
    0.808
MDS_4039
Histone deacetylase superfamily protein.
       0.610
MDS_4333
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.574
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.555
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.448
betC
Sulfatase.
  
    0.441
MDS_3947
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.421
MDS_1693
Molybdenum cofactor synthesis domain-containing protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.411
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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