STRINGSTRING
MDS_4038 MDS_4038 MDS_4035 MDS_4035 tesB tesB MDS_4037 MDS_4037 MDS_1792 MDS_1792 MDS_4039 MDS_4039 MDS_1790 MDS_1790 rnc rnc MDS_1698 MDS_1698 MDS_3947 MDS_3947 MDS_4638 MDS_4638
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4038GCN5-related N-acetyltransferase. (186 aa)    
Predicted Functional Partners:
MDS_4035
HAD family hydrolase.
     
 0.833
tesB
acyl-CoA thioesterase II.
     
 0.823
MDS_4037
Hypothetical protein.
       0.800
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.635
MDS_4039
Histone deacetylase superfamily protein.
     
 0.614
MDS_1790
Lysine/ornithine N-monooxygenase-like protein.
  
  
 0.537
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.516
MDS_1698
GCN5-related N-acetyltransferase.
  
     0.468
MDS_3947
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.411
MDS_4638
GCN5-related N-acetyltransferase.
 
 
 0.409
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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