STRINGSTRING
MDS_4066 MDS_4066 MDS_3869 MDS_3869 leuB leuB MDS_3714 MDS_3714 trpB trpB MDS_3059 MDS_3059 MDS_3870 MDS_3870 trpA trpA serB serB MDS_1754 MDS_1754 MDS_4453 MDS_4453
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4066Hypothetical protein. (323 aa)    
Predicted Functional Partners:
MDS_3869
Acetolactate synthase 3 regulatory subunit.
  
 
 0.951
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
 
 0.950
MDS_3714
Threonine synthase.
  
 
 0.949
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
 0.935
MDS_3059
Hypothetical protein; Belongs to the TPP enzyme family.
  
 0.929
MDS_3870
Acetolactate synthase 3 catalytic subunit.
  
 0.929
trpA
Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
  
 
 0.923
serB
Phosphoserine phosphatase.
    
 0.910
MDS_1754
L-threonine aldolase.
   
 
 0.909
MDS_4453
L-threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.
   
 
 0.909
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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