STRINGSTRING
MDS_4144 MDS_4144 MDS_4145 MDS_4145 aroE-2 aroE-2 MDS_4147 MDS_4147 MDS_1792 MDS_1792 MDS_4146 MDS_4146 MDS_3626 MDS_3626
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4144TetR family transcriptional regulator. (223 aa)    
Predicted Functional Partners:
MDS_4145
4-hydroxyphenylpyruvate dioxygenase.
 
     0.865
aroE-2
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
     0.568
MDS_4147
Xylose isomerase-like TIM barrel.
 
     0.509
MDS_1792
Amino acid adenylation domain-containing protein.
     
 0.494
MDS_4146
Hypothetical protein.
 
     0.476
MDS_3626
NAD-dependent epimerase/dehydratase.
  
     0.408
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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