STRINGSTRING
MDS_4150 MDS_4150 MDS_0266 MDS_0266 MDS_1205 MDS_1205 MDS_1248 MDS_1248 MDS_1512 MDS_1512 MDS_4152 MDS_4152 MDS_4151 MDS_4151 MDS_4661 MDS_4661 MDS_4211 MDS_4211
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4150Hypothetical protein. (156 aa)    
Predicted Functional Partners:
MDS_0266
Hypothetical protein.
  
  
  0.915
MDS_1205
Membrane protein TctB, putative.
     
  0.900
MDS_1248
Hypothetical protein.
     
  0.900
MDS_1512
Hypothetical protein.
     
  0.900
MDS_4152
Hypothetical protein.
 
     0.850
MDS_4151
Hypothetical protein.
 
     0.847
MDS_4661
RpiR family transcriptional regulator.
  
     0.421
MDS_4211
MarR family transcriptional regulator.
  
     0.408
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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