STRINGSTRING
pcaF pcaF MDS_4162 MDS_4162 MDS_4161 MDS_4161 MDS_2754 MDS_2754 fadB fadB MDS_2116 MDS_2116 MDS_0849 MDS_0849 MDS_3963 MDS_3963 MDS_2115 MDS_2115 MDS_2683 MDS_2683 MDS_1190 MDS_1190
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaFBeta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)    
Predicted Functional Partners:
MDS_4162
3-oxoadipate:succinyl-CoA transferase, subunit A.
 
 
 0.982
MDS_4161
3-oxoadipate:succinyl-CoA transferase, subunit B.
 
 
 0.981
MDS_2754
3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein.
 0.963
fadB
Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.957
MDS_2116
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase.
 
 0.955
MDS_0849
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.913
MDS_3963
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.913
MDS_2115
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.912
MDS_2683
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.912
MDS_1190
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.907
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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