STRINGSTRING
MDS_4162 MDS_4162 MDS_4161 MDS_4161 pcaF pcaF MDS_1191 MDS_1191 MDS_1729 MDS_1729 MDS_4200 MDS_4200 pcaD pcaD MDS_2865 MDS_2865 MDS_2755 MDS_2755 pcaH pcaH pcaC pcaC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_41623-oxoadipate:succinyl-CoA transferase, subunit A. (283 aa)    
Predicted Functional Partners:
MDS_4161
3-oxoadipate:succinyl-CoA transferase, subunit B.
 0.999
pcaF
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.982
MDS_1191
butyryl-CoA:acetate CoA transferase.
  
 
 0.957
MDS_1729
Amidase.
     
  0.900
MDS_4200
Amidase; Belongs to the amidase family.
     
  0.900
pcaD
3-oxoadipate enol-lacton hydrolase.
 
 
 0.865
MDS_2865
Beta-ketoadipyl CoA thiolase.
 
 
 0.694
MDS_2755
pcaF-2.
 
 
 0.693
pcaH
Protocatechuate 3,4-dioxygenase.
 
  
 0.672
pcaC
4-carboxymuconolactone decarboxylase.
 
  
 0.654
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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