STRINGSTRING
benB benB benA benA MDS_4168 MDS_4168 MDS_4167 MDS_4167 antA_2 antA_2 catC catC catA catA MDS_4188 MDS_4188 MDS_4456 MDS_4456 MDS_4166 MDS_4166 MDS_0371 MDS_0371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
benBBenzoate dioxygenase, beta subunit. (162 aa)    
Predicted Functional Partners:
benA
Benzoate dioxygenase, alpha subunit.
 
 0.999
MDS_4168
Benzoate dioxygenase, ferredoxin reductase component.
 
 
 0.994
MDS_4167
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.988
antA_2
Rieske (2Fe-2S) domain-containing protein.
 
 
 0.954
catC
Muconolactone delta-isomerase.
 
  
 0.900
catA
Catechol 1,2-dioxygenase.
 
  
 0.886
MDS_4188
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.861
MDS_4456
Rieske (2Fe-2S) domain-containing protein.
 
 
 0.853
MDS_4166
Major facilitator transporter.
 
  
 0.803
MDS_0371
CDP-6-deoxy-delta-3,4-glucoseen reductase.
 
  
 0.704
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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