STRINGSTRING
benA benA benB benB MDS_4168 MDS_4168 MDS_4167 MDS_4167 MDS_4195 MDS_4195 catC catC catA catA MDS_4188 MDS_4188 MDS_4166 MDS_4166 MDS_4189 MDS_4189 MDS_4171 MDS_4171
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
benABenzoate dioxygenase, alpha subunit. (453 aa)    
Predicted Functional Partners:
benB
Benzoate dioxygenase, beta subunit.
 
 0.999
MDS_4168
Benzoate dioxygenase, ferredoxin reductase component.
 
 
 0.992
MDS_4167
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.987
MDS_4195
Aromatic-ring-hydroxylating dioxygenase beta subunit.
 
 
 0.933
catC
Muconolactone delta-isomerase.
 
  
 0.850
catA
Catechol 1,2-dioxygenase.
 
  
 0.841
MDS_4188
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.822
MDS_4166
Major facilitator transporter.
 
   
 0.783
MDS_4189
Cat operon regulatory protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.658
MDS_4171
benABC operon transcriptional activator BenR.
 
   
 0.656
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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