STRINGSTRING
MDS_4172 MDS_4172 pcaG pcaG pcaH pcaH MDS_3207 MDS_3207 MDS_3208 MDS_3208 MDS_4162 MDS_4162 MDS_4171 MDS_4171 MDS_4161 MDS_4161 pcaC pcaC MDS_3632 MDS_3632 pcaD pcaD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4172Transcriptional regulator PcaR. (281 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
  
 0.851
pcaH
Protocatechuate 3,4-dioxygenase.
 
  
 0.840
MDS_3207
Allophanate hydrolase subunit 1.
  
    0.794
MDS_3208
UreA amidolyase related protein.
  
    0.777
MDS_4162
3-oxoadipate:succinyl-CoA transferase, subunit A.
 
  
 0.600
MDS_4171
benABC operon transcriptional activator BenR.
 
  
 0.595
MDS_4161
3-oxoadipate:succinyl-CoA transferase, subunit B.
 
  
 0.592
pcaC
4-carboxymuconolactone decarboxylase.
 
   
 0.589
MDS_3632
GntR family transcriptional regulator.
 
  
 0.539
pcaD
3-oxoadipate enol-lacton hydrolase.
 
   
 0.527
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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