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pcaQ pcaQ pcaG pcaG MDS_4664 MDS_4664 pcaH pcaH MDS_3408 MDS_3408 MDS_1355 MDS_1355 MDS_0686 MDS_0686 MDS_4794 MDS_4794 MDS_3531 MDS_3531 MDS_1984 MDS_1984 MDS_3172 MDS_3172
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
pcaQPca operon transcriptional activator PcaQ; Belongs to the LysR transcriptional regulatory family. (310 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
   
 0.804
MDS_4664
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.755
pcaH
Protocatechuate 3,4-dioxygenase.
 
   
 0.733
MDS_3408
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.719
MDS_1355
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.702
MDS_0686
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.696
MDS_4794
Putative LysR-family regulatory protein.
  
     0.667
MDS_3531
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.628
MDS_1984
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.620
MDS_3172
Transcriptional regulator, LysR family.
  
     0.603
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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