STRINGSTRING
MDS_4228 MDS_4228 MDS_4227 MDS_4227 MDS_4226 MDS_4226 MDS_4225 MDS_4225 MDS_0826 MDS_0826 MDS_0823 MDS_0823 MDS_0824 MDS_0824 MDS_0825 MDS_0825 MDS_0829 MDS_0829 MDS_0828 MDS_0828 MDS_4410 MDS_4410
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4228Formate dehydrogenase accessory protein FdhE. (294 aa)    
Predicted Functional Partners:
MDS_4227
Formate dehydrogenase, gamma subunit.
 
  
 0.973
MDS_4226
Formate dehydrogenase, beta subunit.
 
  
 0.968
MDS_4225
Formate dehydrogenase, alpha subunit.
 
 
 
 0.958
MDS_0826
Nitrate-inducible formate dehydrogenase subunit gamma.
 
  
 0.885
MDS_0823
fdnG, fdhG.
 
 
 
 0.884
MDS_0824
fdnG, fdhG.
 
 
 
 0.884
MDS_0825
Nitrate-inducible formate dehydrogenase, beta subunit.
 
  
 0.866
MDS_0829
Selenocysteine-specific elongation factor.
 
   
 0.773
MDS_0828
Selenocysteine synthase.
 
   
 0.736
MDS_4410
ModE family transcriptional regulator.
 
   
 0.524
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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