STRINGSTRING
MDS_4229 MDS_4229 MDS_4252 MDS_4252 tolA tolA MDS_0460 MDS_0460 tolB tolB MDS_1101 MDS_1101 MDS_2560 MDS_2560 MDS_2961 MDS_2961 MDS_0630 MDS_0630 MDS_1876 MDS_1876 MDS_2886 MDS_2886
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4229TonB-dependent receptor, plug. (617 aa)    
Predicted Functional Partners:
MDS_4252
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.770
tolA
TonB family protein.
   
 
 0.738
MDS_0460
TonB family protein.
 
 
 
 0.734
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.641
MDS_1101
Putative coat protein A of bacteriophage Pf1.
   
 
 0.591
MDS_2560
B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.583
MDS_2961
Hypothetical protein.
    
 
 0.570
MDS_0630
Cobyrinic acid a,c-diamide synthase.
    
 
 0.513
MDS_1876
Cobyrinic acid a,c-diamide synthase.
    
 
 0.513
MDS_2886
Cobyrinic acid a,c-diamide synthase.
    
 
 0.513
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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