Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_4230 | MDS_4231 | MDS_4230 | MDS_4231 | Periplasmic binding protein. | Hypothetical protein. | 0.800 |
MDS_4230 | MDS_4233 | MDS_4230 | MDS_4233 | Periplasmic binding protein. | Aspartyl protease-like protein. | 0.467 |
MDS_4230 | MDS_4234 | MDS_4230 | MDS_4234 | Periplasmic binding protein. | Hypothetical protein. | 0.456 |
MDS_4230 | MDS_4235 | MDS_4230 | MDS_4235 | Periplasmic binding protein. | Phosphatidylglycerophosphatase; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | 0.456 |
MDS_4230 | nusB | MDS_4230 | MDS_4237 | Periplasmic binding protein. | Transcription antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.445 |
MDS_4230 | ribA | MDS_4230 | MDS_4232 | Periplasmic binding protein. | GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | 0.802 |
MDS_4230 | ribH | MDS_4230 | MDS_4238 | Periplasmic binding protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. | 0.445 |
MDS_4230 | thiL | MDS_4230 | MDS_4236 | Periplasmic binding protein. | Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.445 |
MDS_4231 | MDS_4230 | MDS_4231 | MDS_4230 | Hypothetical protein. | Periplasmic binding protein. | 0.800 |
MDS_4231 | MDS_4233 | MDS_4231 | MDS_4233 | Hypothetical protein. | Aspartyl protease-like protein. | 0.467 |
MDS_4231 | MDS_4234 | MDS_4231 | MDS_4234 | Hypothetical protein. | Hypothetical protein. | 0.456 |
MDS_4231 | MDS_4235 | MDS_4231 | MDS_4235 | Hypothetical protein. | Phosphatidylglycerophosphatase; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | 0.456 |
MDS_4231 | nusB | MDS_4231 | MDS_4237 | Hypothetical protein. | Transcription antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.445 |
MDS_4231 | ribA | MDS_4231 | MDS_4232 | Hypothetical protein. | GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | 0.800 |
MDS_4231 | ribH | MDS_4231 | MDS_4238 | Hypothetical protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. | 0.445 |
MDS_4231 | thiL | MDS_4231 | MDS_4236 | Hypothetical protein. | Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.445 |
MDS_4233 | MDS_4230 | MDS_4233 | MDS_4230 | Aspartyl protease-like protein. | Periplasmic binding protein. | 0.467 |
MDS_4233 | MDS_4231 | MDS_4233 | MDS_4231 | Aspartyl protease-like protein. | Hypothetical protein. | 0.467 |
MDS_4233 | MDS_4234 | MDS_4233 | MDS_4234 | Aspartyl protease-like protein. | Hypothetical protein. | 0.786 |
MDS_4233 | MDS_4235 | MDS_4233 | MDS_4235 | Aspartyl protease-like protein. | Phosphatidylglycerophosphatase; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | 0.757 |
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